Journal Papers

Here we have the most recent publication lists. More a complete list is available from here.

RJ Nakatani, M Itabashi, TG Yamada, NF Hiroi, A Funahashi.
Intercellular interaction mechanisms promote diversity in intracellular ATP concentration in Escherichia coli populations. (2022)
Scientific Reports 12, 17946. Springer Nature

Takayuki Nakamura, Joe Sakamoto, Kohki Okabe, Atsushi Taniguchi, Takahiro G. Yamada, Shigenori Nonaka, Yasuhiro Kamei, Akira Funahashi, Makoto Tominaga, Noriko F. Hiroi.
Temperature elevation detection in migrating cells. (2022)
Optics Continuum 1,5; 1085-1097. OPTICA Publishing Group

Marek Ostaszewski, Anna Niarakis, Alexander Mazein, et al.
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. (2021)
Mol Syst Biol 17,10; e10387. EMBO press

R Yamanaka, Y Shindo, K Hotta, N Hiroi, K Oka
Cellular thermogenesis compensates environmental temperature fluctuations for maintaining intracellular temperature. (2020)
Biochemical and Biophysical Research Communications 533,1; 70-76. Academic Press

Yuta Tokuoka, Takahiro G. Yamada, Daisuke Mashiko, Zenki Ikeda, Noriko F. Hiroi, Tetsuya J. Kobayashi, Kazuo Yamagata and Akira Funahashi.
3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis. (2020)
npj systems biology and applications 6,12. Springer Nature and the Systems Biology Institute

Takahiro G Yamada, Yusuke Hiki, Noriko F Hiroi, Elena Shagimardanova, Oleg Gusev, Richard Cornette, Takahiro Kikawada, Akira Funahashi.
Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11. (2020)
PloS one 15,3; e0230218. Public Library of Science

Tsuyoshi Iwasaki, Ryo Takiguchi, Takumi Hiraiwa, Takahiro G Yamada, Kazuto Yamazaki, Noriko F Hiroi, Akira Funahashi.
Neural differentiation dynamics controlled by multiple feedback loops in a comprehensive molecular interaction network. (2020)
Processes 8,2; 166. MDPI

Conference Papers

Takayuki Nakamura, Takaya Saito, Ryuichi Tanimoto, Takahiro Yamada, Akira Funahashi, Atsushi Taniguchi, Shigenori Nonaka, Joe Sakamoto, Yasuhiro Kamei, Makoto Tominaga, Kohki Okabe, Yuki Yanase, Hiroko Kishi, Noriko F Hiroi.
Control and measurement of nano/micro-space temperature that changes cellular behavior. (2021/8/26)
JSAP-OSA Joint Symposia 10p_N404_14. Optical Society of America